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ATB-Dependencies
ParmEd
Commits
0d402180
Commit
0d402180
authored
Apr 19, 2016
by
Bertrand Caron
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Try dealing with NUMEXTRA issues
parent
3e847f30
Pipeline
#517
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_chamberparm.py
parmed/amber/_chamberparm.py
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parmed/amber/_chamberparm.py
View file @
0d402180
...
@@ -182,7 +182,8 @@ class ChamberParm(AmberParm):
...
@@ -182,7 +182,8 @@ class ChamberParm(AmberParm):
nbfixes
=
inst
.
atoms
.
assign_nbidx_from_types
()
nbfixes
=
inst
.
atoms
.
assign_nbidx_from_types
()
# Give virtual sites a name that Amber understands
# Give virtual sites a name that Amber understands
for
atom
in
inst
.
atoms
:
for
atom
in
inst
.
atoms
:
if
isinstance
(
atom
,
ExtraPoint
):
atom
.
type
=
'EP'
pass
#if isinstance(atom, ExtraPoint): atom.type = 'EP'
# Fill the Lennard-Jones arrays/dicts
# Fill the Lennard-Jones arrays/dicts
ntyp
=
0
ntyp
=
0
for
atom
in
inst
.
atoms
:
for
atom
in
inst
.
atoms
:
...
...
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